; For more background on the testing and optimization of the parameters, ; please see the following refs: ; S.J. Marrink, A.H. de Vries, A.E. Mark. ; Coarse grained model for semi-quantitative lipid simulations. ; JPC-B, 108:750-760, 2004. ; and for poly-unsaturated lipids: ; S.J. Marrink, A.H. de Vries, T.A. Harroun, J. Katsaras, S.R. Wassall. ; Cholesterol shows preference for the interior of polyunsaturated lipid membranes. ; JACS, 130:10-11, 2008. ; ; and ; ; H.J. Risselada, S.J. Marrink. ; The molecular face of lipid rafts in model membranes. ; PNAS, 105:17367-17372, 2008. ;;;;;; DIPALMITOYL PHOSPHATIDYLCHOLINE ; ; in general models PCs with saturated tail lengths C15-18 [moleculetype] ; molname nrexcl DPPC 1 [atoms] ; id type resnr residu atom cgnr charge 1 Q0 1 DPPC NC3 1 1.0 2 Qa 1 DPPC PO4 2 -1.0 3 Na 1 DPPC GL1 3 0 4 Na 1 DPPC GL2 4 0 5 C1 1 DPPC C1A 5 0 6 C1 1 DPPC C2A 6 0 7 C1 1 DPPC C3A 7 0 8 C1 1 DPPC C4A 8 0 9 C1 1 DPPC C1B 9 0 10 C1 1 DPPC C2B 10 0 11 C1 1 DPPC C3B 11 0 12 C1 1 DPPC C4B 12 0 [bonds] ; i j funct length force.c. 1 2 1 0.470 1250 2 3 1 0.470 1250 3 4 1 0.370 1250 3 5 1 0.470 1250 5 6 1 0.470 1250 6 7 1 0.470 1250 7 8 1 0.470 1250 4 9 1 0.470 1250 9 10 1 0.470 1250 10 11 1 0.470 1250 11 12 1 0.470 1250 [angles] ; i j k funct angle force.c. 2 3 4 2 120.0 25.0 2 3 5 2 180.0 25.0 3 5 6 2 180.0 25.0 5 6 7 2 180.0 25.0 6 7 8 2 180.0 25.0 4 9 10 2 180.0 25.0 9 10 11 2 180.0 25.0 10 11 12 2 180.0 25.0 1687