=====================================
Force field parameters from Lipidbook
=====================================

Parameter files in this zip file were downloaded from https://www.lipidbook.org.
Linked parameters need to be manually downloaded via the links in links.txt.

Always cite the primary reference(s) for the parameters, which can be
found at the end of this file.

Please cite Lipidbook in your published work with the reference

J. Domanski, P. Stansfeld, M.S.P. Sansom, and O. Beckstein.
Lipidbook: A Public Repository for Force Field Parameters Used in Membrane
Simulations. J. Membrane Biol. 236 (2010), 255--258. doi:10.1007/s00232-010-9296-8.


License: CC-Attribute-ShareAlike 3.0 (cc-by-sa-3.0  http://creativecommons.org/licenses/by-sa/3.0/) 
 NOTE: The licence REQUIRES that you cite the primary reference when
       you use and/or modify these files.  See the link under Licence for
       details.

Overview
========
Lipid:         cholesterol (chol)
Forcefield:    GROMOS87
Code:          Gromacs
Version:       1 (created: 02-03-2011, last update: 02-03-2011)
Curator:       Jan Domanski
Lipidbook URL: https://lipidbook.org/version/show/id/65.html
File manifest
=============
Downloaded files are listed with SHA1 checksums. You can compute the
checksums of the downloaded files (e.g. with the 'openssl sha1' or
the 'sha1sum' commands) and compare them to the listed ones. If they
agree you have verified the files; it also allows a simple check of
which files changed between versions.
cholesterol-single.gro    : 6177b54fea7c4307456471b6bf80aaf01fb8dba1
cholesterol.itp           : 93d9132b667fc45942831615e44314415d522fbd
ffgmx.itp                 : 02283f8f12fc90fe08260461db72fdb8244d6c7e
ffgmxbon.itp              : 9679f35c389a6f4da9e2f0b6ff02a72ece6e97b9
ffgmxnb.itp               : 4fdcf8c4a7630bcd9abbd4629168ce12bead5d13
links.txt                 : adc83b19e793491b1c6ea0fd8b46cd9f32e592fc
lipid.itp                 : 43c6b5d9bdb0c35fef4e35bf6f08b1937559d866
SHA1 of all files         : b05305f48983ea32b796c56c81ce517322a396f8

Primary reference(s)
===================
Please always credit the original authors of the parameters by citing
these papers:

Title:     Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol.
Authors:   Höltje M, Förster T, Brandt B, Engels T, von Rybinski W, Höltje HD
Journal:   Biochim Biophys Acta
Year:      2001
Volume:    1511
Page:      156-167
pubmed id: 11248214
doi:       10.1016/S0005-2736(01)00270-X

Additional notes: 
           -

Title:     The structure of cholesterol
Authors:   H.-S. Shieh, L. G. Hoard and C. E. Nordman
Journal:   Acta Cryst.
Year:      1981
Volume:    B37
Page:      1538-1543
pubmed id: 
doi:       10.1107/S0567740881006523

Additional notes: experimental data
           -

Title:     Pseudosymmetry in cholesterol monohydrate
Authors:   B. M. Craven
Journal:   Acta Cryst.
Year:      1979
Volume:    B35
Page:      1123-1128
pubmed id: 
doi:       10.1107/S0567740879005719

Additional notes: experimental data
           -

Title:     Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature.
Authors:   Berger O, Edholm O, Jähnig F
Journal:   Biophys J
Year:      1997
Volume:    72
Page:      2002-13
pubmed id: 9129804
doi:       10.1016/S0006-3495(97)78845-3

Additional notes: 
           -

Title:     Assessing the nature of lipid raft membranes.
Authors:   Niemelä PS, Ollila S, Hyvönen MT, Karttunen M, Vattulainen I
Journal:   PLoS Comput Biol
Year:      2007
Volume:    3
Page:      e34
pubmed id: 17319738
doi:       10.1371/journal.pcbi.0030034

Additional notes: 
           -

Title:     A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer.
Authors:   Tieleman DP, Berendsen HJ
Journal:   Biophys J
Year:      1998
Volume:    74
Page:      2786-801
pubmed id: 9635733
doi:       10.1016/S0006-3495(98)77986-X

Additional notes: 
           -

