Viewing lipid DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Name	1,2-dimyristoyl-sn-glycero-3-phosphocholine
Shorthand	DMPC
Pubchem	26197
CAS RN	18194-24-6

Associated packages

GROMOS53a6 Gromacs
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	GROMOS53a6
Code	Gromacs
Authors	A Kukol
Licence
Creation date	31 Aug 2009
Lipid parameters of Kukol, JCTC 5 (2009), 615: United atom (UA) lipids were constructed from the GROMOS 53a6 atom types. Experimental areas per lipid are reproduced to within 3% for DPPC without application of surface tension, and 1.5% for POPC. Parameters were copied directly from the supplementary information available from 10.1021/ct8003468 ([read more]

GROMOS43a1 Gromacs
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	GROMOS43a1
Code	Gromacs
Authors	Tieleman DP
Licence
Creation date	11 Dec 2009
Parameters taken from lipid.itp found at: http://moose.bio.ucalgary.ca/index.php?page=Structures_and_Topologies DMPC bilayer self-assembled using CG then converted to atomistic by CG2AT. Atomistic bilayer equilibrated though 10 ns of MD. [read more]

GROMOS53a6 Gromacs
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	GROMOS53a6
Code	Gromacs
Authors	David Poger, Alan E. Mark
Licence
Creation date	03 Aug 2010
Molecular dynamics simulations of fully hydrated pure bilayers of four widely studied phospholipids, 1,2-dilauroyl-sn-glycero-3-phosphocholine (DLPC), 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC), 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), and 2-oleoyl-1-palmitoyl-sn-glycero-3-phosphocholine (POPC) using a recent revision of the GROMOS96 force field are reported. It is shown that the force field reproduces the structure and the hydration of bilayers formed by [...] [read more]

Slipids/AMBER Gromacs
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	Slipids/AMBER
Code	Gromacs
Authors	Jämbeck JP, Lyubartsev AP
Licence
Creation date	02 May 2012
An all-atomistic force field (FF) for saturated PC lipids coined Stockholm lipids (Slipids). All parameters have been developed in a consistent and physical sound way. All the partial atomic [...] [read more]

GROMOS43A1-S3 Gromacs
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	GROMOS43A1-S3
Code	Gromacs
Authors	Chiu SW, Pandit SA, Scott HL, Jakobsson E
Licence
Creation date	01 Jun 2012
A new GROMOS43a1-based force field (43A1-S3) for simulation of membranes with the Gromacs simulation package. The validity of the force fields is demonstrated by correct replication of X-ray form factors and NMR order parameters over a wide range of membrane compositions in semi-isotropic NTP [...] [read more]

AMBER-GAFF Amber
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)

Lipid	DMPC 1,2-dimyristoyl-sn-glycero-3-phosphocholine
Forcefield	AMBER-GAFF
Code	Amber
Authors	-
Licence
Creation date	09 Oct 2013
GAFFlipid parameter files for simulation of DMPC using AMBER. Also included are PDB files of 72, 288 and 2x288 DMPC bilayers. To unzip: tar -xvzf DMPC.tgz [read more]