Browser

The Browser gives quick access to packages through the Filter packages function and presents a list of the selected packages. It is the main entry point into the database.

The complete list of all lipid packages is also available (but might take a while to load).

Filter packages

You can filter packages by forcefield, lipid abbreviation and simulation code type. Multiple entries can be selected by using the SHIFT and/or other special keys together with mouse clicks.

Database fields

Forcefield: type and version of the force field, combined in a single identifier
Code: simulation code; determines the file format of the parameter files
Lipid: common abbreviation of a lipid or other molecule

The lone wildcard character "*" selects all entries in the given category.

Forcefield	Code	Lipid

*
AMBER-GAFF
Bondini
CHARMM22
CHARMM27
CHARMM36
GROMOS-CKP
GROMOS43a1
GROMOS43A1-S3
GROMOS53a6
GROMOS87
Martini
OPLS
Slipids/AMBER

*
Amber
Charmm
Gromacs
Hippo
NAMD

*
DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine)
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)
POPE (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine)
DPPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine)
POPC (1-palmitoyl,2-oleoyl-sn-glycero-3-phosphocholine)
DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine)
*PG (*phosphoglycerol )
DPPG (1,2-dipalmitoyl-sn-glycero-3-phosphoglycerol)
1OCT (1-octanol)
DPhyPC (1,2-diphytanoyl-sn-glycero-3-phosphocholine)
DPhPG (2,3-di-O-phytanyl-sn-glycero-1-phosphoryl-3'-sn-glycerol)
DPhPGP-Me (2,3-di-O-phytanyl-sn-glycero-1-phosphoryl-3'-sn-glycerol 1'-phosphomethyl)
DPhPGS (2,3-di-O-phytanyl-sn-glycero-1-phosphoryl-3'-sn-glycerol 1'-sulphate)
DOPE (1,2-dioleoyl-sn-glycero-3-phosphoethanolamine)
DPPE (1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine)
chol (cholesterol)
DLPE (1,2-dilauroyl-sn-glycero-3-phosphoethanolamine)
DMPG (1,2-dimyristoyl-sn-glycero-3-phosphoglycerol)
DPG (cardiolipin)
DLPC (1,2-dilauroyl-sn-glycero-3-phosphocholine)
DUPC (1,2-(cis-cis-9,12-octadecadienoyl)-sn-glycero-3-phosphatidylcholine)
SM (D-erythro-n-palmitoyl-sphingomyelin)
POPO (1',3'-bis[1-palmitoyl,2-oleoyl-sn-glycero-3-phospho]-sn-glycerol)
Lipid A (Lipid A (E. coli))
SMGL (18:0 SM (d18:1/18:0) N-stearoyl-D-erythro-sphingosylphosphorylcholine)
SOPC (1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine)
PI(4,5)P2 (1,2-dipalmitoyl-sn-glycero-3-phospho-(1'-myo-inositol-4',5'-bisphosphate))
DLPG (1,2-dilauroyl-sn-glycero-3-phospho-(1'-rac-glycerol))
DOPG (1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-rac-glycerol) )
DOPS (1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-L-serine)
DSPG (1,2-distearoyl-sn-glycero-3-phospho-(1'-rac-glycerol) )
Lipid_A (Lipid A (P. aeruginosa))
DDM (dodecyl maltoside)