Viewing lipid POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

Name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Shorthand POPG
Pubchem 9547107
CAS RN 268550-95-4

Associated packages

CHARMM27 Charmm
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

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Lipid POPG 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Forcefield CHARMM27
Code Charmm
Authors Hyunbum Jang, Naveen Michaud-Agrawal, Jennifer M Johnston, and Thomas B Woolf
Licence Public Domain Open Knowledge
Creation date 21 Aug 2009

POPG parameters as used in Jang et al, Proteins 72 (2008), 299. Parameters did not appear in the paper but were obtained from the authors directly. (OB:changed HAL -> HAL1, HAL2 for use with par_all27_lipid.prm)

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GROMOS53a6 Gromacs
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

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Lipid POPG 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Forcefield GROMOS53a6
Code Gromacs
Authors A Kukol
Licence fair use
Creation date 31 Aug 2009
D-POPG and L-POPG (the bilayer appears to be pure D-POPG). Lipid parameters of Kukol, JCTC 5 (2009), 615: United atom (UA) lipids were constructed from the GROMOS 53a6 atom types. Experimental areas per lipid are reproduced to within 3% for DPPC without application of surface tension, and 1.5% for POPC. Parameters were copied directly [...] [read more]

Bondini Gromacs
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

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Lipid POPG 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Forcefield Bondini
Code Gromacs
Authors Wee CL, Gavaghan D, and Sansom MS.
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Creation date 17 Feb 2010
POPG lipid to be used with SJ Marrink's CG lipid parameters as described in: S.J. Marrink, A.H. de Vries, A.E. Mark. Coarse grained model for semi-quantitative lipid simulations. J. Phys. Chem. B, 108:750-760, 2004. [read more]

GROMOS-CKP Gromacs
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

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Lipid POPG 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Forcefield GROMOS-CKP
Code Gromacs
Authors Piggot TJ, Holdbrook DA, Khalid S
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Creation date 22 May 2012

POPG GROMOS-CKP lipid parameters. These lipid parameters can be used with the GROMOS 53A6 and GROMOS 54A7 protein force fields without any modifications to the parameters.


If you use these parameters please read and cite:


Electroporation of the E. coli and S. aureus Membranes: Molecular Dynamics [...] [read more]

Slipids/AMBER Gromacs
POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol)

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Lipid POPG 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
Forcefield Slipids/AMBER
Code Gromacs
Authors Jämbeck JP, Lyubartsev AP
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Creation date 10 Nov 2012

See http://people.su.se/~jjm/Stockholm_Lipids/Home.html for for more details and structure files to download

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