18:0 SM (d18:1/18:0) N-stearoyl-D-erythro-sphingosylphosphorylcholine

Slipids/AMBER Gromacs by XYZ

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Lipid 18:0 SM (d18:1/18:0) N-stearoyl-D-erythro-sphingosylphosphorylcholine (SMGL)
Pubchem CID:6453725
Forcefield Slipids/AMBER
Code Gromacs
Authors Jämbeck, J. P. M. and Lyubartsev, A. P.
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Curator Joakim Jämbeck
Abstract

See http://people.su.se/~jjm/Stockholm_Lipids/Home.html for for more details and structure files to download

References

Jämbeck, J. P. M. and Lyubartsev, A. P., Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids., J. Phys. Chem. B 116 (2012), 3164-79, doi: 10.1021/jp212503e, pubmed:22352995 [pubmed] [hubmed]
Primary Experimental

Jämbeck, J. P. M. and Lyubartsev, A. P., An Extension and Further Validation of an All-Atomistic Force Field for Biological Membranes, J. Chem. Theory Comput. 8 (2012), 2938–2948, doi: 10.1021/ct300342n, [no pubmed id]
Primary Experimental

Jämbeck, J. P. M. and Lyubartsev, A. P., Another Piece of the Membrane Puzzle: Extending Slipids Further, J. Chem. Theory Comput. (2012), doi: 10.1021/ct300777p, [no pubmed id]
Primary Experimental

Versions

Version 2
Topology
Parameters
forcefield.ff.zip 7a30a7aaa40b5dca0070efad5ad847c95d662b26
PDB structure
Bilayer structure
Version 1
Topology
SM18.itp dfffa7e9e643ca748e0c11b4b1f549a72e0afb8d
Parameters
forcefield.ff.zip 9fe6b1ec3868cb6dd7fd9ceabd4999bae1c05845
PDB structure
Bilayer structure
18SM.gro 473bdc169f0c7733460b46bfe0e9908dd4e27889
WebCite:http://people.su.se/~jjm/Stockholm_Lipids/Downloads.html WebCiteID: 6C4MCm7VT