GROMOS43a1 Gromacs by XYZ

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Lipid 1-palmitoyl,2-oleoyl-sn-glycero-3-phosphocholine (POPC)
Pubchem CID:5497103
Forcefield GROMOS43a1
Code Gromacs
Authors Tieleman DP
Licence fair use
Curator Phill Stansfeld

Parameters taken from lipid.itp found at: http://moose.bio.ucalgary.ca/index.php?page=Structures_and_Topologies POPC bilayer self-assembled using CG then converted to atomistic by CG2AT. Atomistic bilayer equilibrated though 10 ns of MD.


Berger O, Edholm O, Jähnig F, Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature., Biophys J 72 (1997), 2002-13, doi: 10.1016/S0006-3495(97)78845-3, pubmed:9129804 [pubmed] [hubmed]
Primary Experimental

Tieleman DP, [no doi], [no pubmed id] Notes: (unpublished)
Primary Experimental


Version 1
popc-G9643a1.itp 0ae8631350ebb80cd4ba3adfe229ad329abf2da0
PDB structure
popc-structure.pdb 89f37c7ae4afb05b1ef05bff7634713c569551bb
Bilayer structure
popc.pdb 5f4fa63b3de660343ebce85614eee18a0d61e56c