1-palmitoyl,2-oleoyl-sn-glycero-3-phosphocholine

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Lipid	1-palmitoyl,2-oleoyl-sn-glycero-3-phosphocholine (POPC) Pubchem CID:5497103
Forcefield	GROMOS87
Code	Gromacs
Authors	Niemelä PS, Ollila S, Hyvönen MT, Karttunen M, Vattulainen I
Licence
Curator	Jan Domanski
Abstract	POPC atomistic parameters developed by Peter Tieleman. The lipid.itp comes from P. Tieleman's lab webpage. The ffgmx*.* are the gromos parameters (come with Gromacs package). Both of these files are the versions available in 2007.

References

Niemelä PS, Ollila S, Hyvönen MT, Karttunen M, Vattulainen I, Assessing the nature of lipid raft membranes., PLoS Comput Biol 3 (2007), e34, doi: 10.1371/journal.pcbi.0030034, pubmed:17319738 [pubmed] [hubmed]
Primary Experimental

Berger O, Edholm O, Jähnig F, Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature., Biophys J 72 (1997), 2002-13, doi: 10.1016/S0006-3495(97)78845-3, pubmed:9129804 [pubmed] [hubmed]
Primary Experimental

Tieleman DP, Berendsen HJ, A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer., Biophys J 74 (1998), 2786-801, doi: 10.1016/S0006-3495(98)77986-X, pubmed:9635733 [pubmed] [hubmed]
Primary Experimental

Versions

Version	2
Topology	WebCite:http://moose.bio.ucalgary.ca/files/lipid.itp WebCiteID: 64YIoh76a ffgmx.itp 02283f8f12fc90fe08260461db72fdb8244d6c7e ffgmxbon.itp 9679f35c389a6f4da9e2f0b6ff02a72ece6e97b9 ffgmxnb.itp 4fdcf8c4a7630bcd9abbd4629168ce12bead5d13 popc.itp 8d72afc2e5b5728660536248294f1c95ba31bf1c
Parameters
PDB structure	popc-single.gro 7219daaa84432d24a40335971de2f6613359e031
Bilayer structure
View discussion Download (.zip)

Version	1
Topology	ffgmx.itp 02283f8f12fc90fe08260461db72fdb8244d6c7e ffgmxbon.itp 9679f35c389a6f4da9e2f0b6ff02a72ece6e97b9 ffgmxnb.itp 4fdcf8c4a7630bcd9abbd4629168ce12bead5d13 lipid.itp 43c6b5d9bdb0c35fef4e35bf6f08b1937559d866 popc.itp 8d72afc2e5b5728660536248294f1c95ba31bf1c
Parameters
PDB structure	popc-single.gro 7219daaa84432d24a40335971de2f6613359e031
Bilayer structure
View discussion Download (.zip)