Martini Gromacs by XYZ

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Lipid 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC)
Pubchem CID:6139
Forcefield Martini
Code Gromacs
Authors Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Curator Jan Domanski

diC(16:0)-PC - DPPC - topology for MARTINI. The package includes a 128-DPPC bilayer patch.


Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH, The MARTINI force field: coarse grained model for biomolecular simulations., J Phys Chem B 111 (2007), 7812-24, doi: 10.1021/jp071097f, pubmed:17569554 [pubmed] [hubmed]
Primary Experimental

Marrink SJ, de Vries AH, Harroun TA, Katsaras J, Wassall SR, Cholesterol shows preference for the interior of polyunsaturated lipid membranes., J Am Chem Soc 130 (2008), 10-1, doi: 10.1021/ja076641c, pubmed:18076174 [pubmed] [hubmed]
Primary Experimental

Risselada HJ, Marrink SJ, The molecular face of lipid rafts in model membranes., Proc Natl Acad Sci U S A 105 (2008), 17367-72, doi: 10.1073/pnas.0807527105, pubmed:18987307 [pubmed] [hubmed]
Primary Experimental


Version 1
dppc.itp 1a551276b5b315954d076e4392e809a2e93b86c0
topol.top ba617aa7dc15db9db44ec92923f8e543fd8a14c7
grompp.mdp 8141b8b559ea7178afb07f7c416732001617f86b
PDB structure
Bilayer structure
bilayer-128.gro 63492509c5cfb80d9ffb7cea3576585b8b811a9a