Bondini Gromacs by XYZ

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Lipid *phosphoglycerol (*PG)
Forcefield Bondini
Code Gromacs
Authors Scott KA, Bond PJ, Ivetac A, Chetwynd AP, Khalid S, and Sansom MS.
Licence Public Domain Open Knowledge
Curator Benjamin Hall

ITP for PG lipids used in Bondini (a coarse grained force field based on SJ Marrink's lipid CG force field (later developed into MARTINI), which includes CG particles for amino acids, including an Nm type to give the backbone residues appropriate hydrophilicity)


Scott KA, Bond PJ, Ivetac A, Chetwynd AP, Khalid S, and Sansom MS., Coarse-grained MD simulations of membrane protein-bilayer self-assembly., Structure 16 (2008), 621-30, doi: 10.1016/j.str.2008.01.014, pubmed:18400182 [pubmed] [hubmed]
Primary Experimental

Sansom MS, Scott KA, and Bond PJ., Coarse-grained simulation: a high-throughput computational approach to membrane proteins., Biochem Soc Trans 36 (2008), 27-32, doi: 10.1042/BST0360027, pubmed:18208379 [pubmed] [hubmed]
Primary Experimental


Version 1
bond-dppg.itp 4871763610ee1d9358ed067d4308e65234ea6dbe
PDB structure
Bilayer structure