1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine

GROMOS-CKP Gromacs by XYZ

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Lipid 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE)
Pubchem CID:65109
Forcefield GROMOS-CKP
Code Gromacs
Authors Piggot TJ, Holdbrook DA, Khalid S
Licence CreativeCommons Attribution-ShareAlike licence 3.0 Open Knowledge
Curator Tom Piggot
Abstract

DPPE GROMOS-CKP lipid parameters. These lipid parameters can be used with the GROMOS 53A6 and GROMOS 54A7 protein force fields without any modifications to the parameters.


If you use these parameters please read and cite:


Electroporation of the E. coli and S. aureus Membranes: Molecular Dynamics Simulations of Complex Bacterial Membranes. Thomas J. Piggot, Daniel A. Holdbrook, and Syma Khalid. The Journal of Physical Chemistry B 2011 115 (45), 13381-13388.


References

Piggot TJ, Holdbrook DA, Khalid S, Electroporation of the E. coli and S. aureus membranes: molecular dynamics simulations of complex bacterial membranes., J Phys Chem B 115 (2011), 13381-8, doi: 10.1021/jp207013v, pubmed:21970408 [pubmed] [hubmed]
Primary Experimental

Versions

Version 2
Topology
Parameters
PDB structure
Bilayer structure
md-DPPE_200ns.gro 5876a43a84f6103e5fcb03f9c98932d2109f557d
Version 1
Topology
DPPE_GROMOS-CKP.itp 8302382ea9ee8ef90eabe8f308c6ad5c11ac611e
Parameters
PDB structure
Bilayer structure
md-DPPE_200ns.gro 4a59df4f92f6487bf446ccf0ca977e8cf0098299